Task 532521

Name boinc2docker_24825_1602237417.843322_3
Workunit 244270
Created 10 Oct 2020, 7:29:11 UTC
Sent 10 Oct 2020, 7:37:07 UTC
Report deadline 17 Oct 2020, 7:37:07 UTC
Received 10 Oct 2020, 7:42:26 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 673
Run time 3 min 30 sec
CPU time 2 min 11 sec
Validate state Valid
Credit 5.47
Device peak FLOPS 11.38 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 71.39 MB
Peak swap size 76.10 MB
Peak disk usage 449.80 MB

Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2020-10-10 18:39:25 (8324): vboxwrapper (7.9.26200): starting
2020-10-10 18:39:25 (8324): Feature: Checkpoint interval offset (498 seconds)
2020-10-10 18:39:25 (8324): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2020-10-10 18:39:26 (8324): Detected: Minimum checkpoint interval (600.000000 seconds)
2020-10-10 18:39:26 (8324): Create VM. (boinc_332c1116e18127d3, slot#11)
2020-10-10 18:39:26 (8324): Updating drive controller type and model for desired configuration.
2020-10-10 18:39:27 (8324): Setting Memory Size for VM. (5268MB)
2020-10-10 18:39:27 (8324): Setting CPU Count for VM. (4)
2020-10-10 18:39:27 (8324): Setting Chipset Options for VM.
2020-10-10 18:39:28 (8324): Setting Boot Options for VM.
2020-10-10 18:39:28 (8324): Setting Network Configuration for NAT.
2020-10-10 18:39:29 (8324): Enabling VM Network Access.
2020-10-10 18:39:29 (8324): Disabling USB Support for VM.
2020-10-10 18:39:30 (8324): Disabling COM Port Support for VM.
2020-10-10 18:39:30 (8324): Disabling LPT Port Support for VM.
2020-10-10 18:39:30 (8324): Disabling Audio Support for VM.
2020-10-10 18:39:30 (8324): Disabling Clipboard Support for VM.
2020-10-10 18:39:31 (8324): Disabling Drag and Drop Support for VM.
2020-10-10 18:39:31 (8324): Adding storage controller(s) to VM.
2020-10-10 18:39:31 (8324): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2020-10-10 18:39:31 (8324): Adding VirtualBox Guest Additions to VM.
2020-10-10 18:39:32 (8324): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2020-10-10 18:39:32 (8324): Enabling shared directory for VM.
2020-10-10 18:39:33 (8324): Starting VM using VboxManage interface. (boinc_332c1116e18127d3, slot#11)
2020-10-10 18:39:39 (8324): Successfully started VM. (PID = '9572')
2020-10-10 18:39:39 (8324): Reporting VM Process ID to BOINC.
2020-10-10 18:39:44 (8324): Guest Log: BIOS: VirtualBox 6.1.12

2020-10-10 18:39:44 (8324): Guest Log: CPUID EDX: 0x178bfbff

2020-10-10 18:39:44 (8324): Guest Log: BIOS: No PCI IDE controller, not probing IDE

2020-10-10 18:39:44 (8324): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2020-10-10 18:39:44 (8324): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2020-10-10 18:39:44 (8324): Guest Log: BIOS: Boot from Hard Disk 0 failed

2020-10-10 18:39:44 (8324): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2020-10-10 18:39:44 (8324): Guest Log: BIOS: Booting from CD-ROM...

2020-10-10 18:39:44 (8324): Guest Log: BIOS: KBD: unsupported int 16h function 03

2020-10-10 18:39:44 (8324): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2020-10-10 18:39:44 (8324): VM state change detected. (old = 'poweroff', new = 'running')
2020-10-10 18:39:55 (8324): Preference change detected
2020-10-10 18:39:55 (8324): Setting CPU throttle for VM. (100%)
2020-10-10 18:39:56 (8324): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2020-10-10 18:40:18 (8324): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2020-10-10 18:40:18 (8324): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2020-10-10 18:40:18 (8324): Guest Log: net.ipv4.ip_forward = 1

2020-10-10 18:40:18 (8324): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2020-10-10 18:40:18 (8324): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2020-10-10 18:40:18 (8324): Guest Log: sysctl: "cannot stat %s" is an unknown key

2020-10-10 18:40:18 (8324): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2020-10-10 18:40:18 (8324): Guest Log: Segmentation fault

2020-10-10 18:40:18 (8324): Guest Log: automount ...

2020-10-10 18:40:18 (8324): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2020-10-10 18:40:18 (8324): Guest Log: automount over.

2020-10-10 18:40:18 (8324): Guest Log: Setting hostname to boot2docker Done.

2020-10-10 18:40:18 (8324): Guest Log: Sat Oct 10 18:40:14 UTC 2020 dhcp -------------------------------

2020-10-10 18:40:24 (8324): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1118)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00 (1358)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1359)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1360)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1361)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1362)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1363)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1364)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1365)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1366)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1367)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1368)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1369)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1370)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1371)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1372)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1373)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:03 (1374)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7 (1375)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input7/event6 (1376)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1377)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1378)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1379)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1380)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1381)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1382)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1383)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1384)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1385)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1386)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1387)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1388)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1389)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1390)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1391)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1392)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1393)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1394)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1395)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:01 (1396)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:01/device:02 (1397)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:04 (1398)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1399)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1400)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1401)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1402)

2020-10-10 18:40:24 (8324): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1403)

2020-10-10 18:40:24 (8324): Guest Log: Sat Oct 10 18:40:21 UTC 2020 dhcp -------------------------------

2020-10-10 18:40:24 (8324): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.000644 main     Log opened 2020-10-10T18:40:21.230925000Z

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.000989 main     OS Product: Linux

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001065 main     OS Release: 4.1.19-boot2docker

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001160 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001235 main     Executable: /sbin/VBoxService

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001238 main     Process ID: 838

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001240 main     Package type: LINUX_64BITS_GENERIC

2020-10-10 18:40:24 (8324): Guest Log: BoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  00:00:00.002501 main     5.0.16 r105871 started. Verbose level = 0

2020-10-10 18:40:24 (8324): Guest Log: 2016 17:38:55) release log

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.000644 main     Log opened 2020-10-10T18:40:21.230925000Z

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.000989 main     OS Product: Linux

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001065 main     OS Release: 4.1.19-boot2docker

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001160 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001235 main     Executable: /sbin/VBoxService

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001238 main     Process ID: 838

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.001240 main     Package type: LINUX_64BITS_GENERIC

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.002501 main     5.0.16 r105871 started. Verbose level = 0

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.073809 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2020-10-10 18:40:24 (8324): Guest Log: 00:00:00.074414 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2020-10-10 18:40:24 (8324): Guest Log: Mounting BOINC shared/...

2020-10-10 18:40:24 (8324): Guest Log: -------------------

2020-10-10 18:40:24 (8324): Guest Log: Sat Oct 10 07:40:23 UTC 2020

2020-10-10 18:40:29 (8324): Guest Log: 00:00:05.078631 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2020-10-10 18:40:29 (8324): Guest Log: Sat Oct 10 07:40:26 UTC 2020

2020-10-10 18:40:29 (8324): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2020-10-10 18:40:29 (8324): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2020-10-10 18:40:29 (8324): Guest Log:     inet 127.0.0.1/8 scope host lo

2020-10-10 18:40:29 (8324): Guest Log:        valid_lft forever preferred_lft forever

2020-10-10 18:40:29 (8324): Guest Log:     inet6 ::1/128 scope host 

2020-10-10 18:40:29 (8324): Guest Log:        valid_lft forever preferred_lft forever

2020-10-10 18:40:29 (8324): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2020-10-10 18:40:29 (8324): Guest Log:     link/ether 3e:c5:f9:13:20:74 brd ff:ff:ff:ff:ff:ff

2020-10-10 18:40:29 (8324): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2020-10-10 18:40:29 (8324): Guest Log:     link/ether 08:00:27:88:79:54 brd ff:ff:ff:ff:ff:ff

2020-10-10 18:40:29 (8324): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2020-10-10 18:40:29 (8324): Guest Log:        valid_lft forever preferred_lft forever

2020-10-10 18:40:29 (8324): Guest Log:     inet6 fe80::a00:27ff:fe88:7954/64 scope link 

2020-10-10 18:40:29 (8324): Guest Log:        valid_lft forever preferred_lft forever

2020-10-10 18:40:29 (8324): Guest Log: -------------------

2020-10-10 18:40:29 (8324): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2020-10-10 18:40:29 (8324): Guest Log: Waiting for Docker daemon to start...

2020-10-10 18:40:29 (8324): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2020-10-10 18:40:29 (8324): Guest Log: Running boinc_app...

2020-10-10 18:40:29 (8324): Guest Log: Importing Docker image from BOINC...

2020-10-10 18:40:35 (8324): Guest Log: 00:00:10.080207 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2020-10-10 18:42:46 (8324): Guest Log: Prerun diagnostics...

2020-10-10 18:42:46 (8324): Guest Log: REPOSITORY           TAG                 IMAGE ID            CREATED             SIZE

2020-10-10 18:42:46 (8324): Guest Log: carlosred/bedtools   latest              4ddcf547f34b        2 years ago         1.192 GB

2020-10-10 18:42:46 (8324): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2020-10-10 18:42:46 (8324): Guest Log: 1.2G	/var/lib/docker

2020-10-10 18:42:46 (8324): Guest Log:               total        used        free      shared  buff/cache   available

2020-10-10 18:42:46 (8324): Guest Log: Mem:           5096          67        3586        1376        1443        3593

2020-10-10 18:42:46 (8324): Guest Log: Swap:          1222           0        1222

2020-10-10 18:42:46 (8324): Guest Log: Prerun commands...

2020-10-10 18:42:46 (8324): Guest Log: Running... 

2020-10-10 18:42:46 (8324): Guest Log: --2020-10-10 07:42:42--  http://boinc.tacc.utexas.edu:5060/boincserver/v2/reef/saumya.shah@utsa.edu/data.tar.gz

2020-10-10 18:42:46 (8324): Guest Log: Resolving boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)... 129.114.60.150

2020-10-10 18:42:46 (8324): Guest Log: Connecting to boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)|129.114.60.150|:5060... connected.

2020-10-10 18:42:46 (8324): Guest Log: HTTP request sent, awaiting response... 200 OK

2020-10-10 18:42:46 (8324): Guest Log: Length: 257 [text/html]

2020-10-10 18:42:46 (8324): Guest Log: Saving to: 'data.tar.gz'

2020-10-10 18:42:46 (8324): Guest Log:      0K                                                       100% 21.9M=0s

2020-10-10 18:42:46 (8324): Guest Log: 2020-10-10 07:42:43 (21.9 MB/s) - 'data.tar.gz' saved [257/257]

2020-10-10 18:42:46 (8324): Guest Log: Error: unable to open file or unable to determine types for file query.bed

2020-10-10 18:42:46 (8324): Guest Log: Postrun commands...

2020-10-10 18:42:46 (8324): Guest Log: boinc_app exited (0)

2020-10-10 18:42:46 (8324): Guest Log: Saving results...

2020-10-10 18:42:46 (8324): Guest Log: bed_test.txt

2020-10-10 18:42:46 (8324): Guest Log: d1.bed

2020-10-10 18:42:46 (8324): Guest Log: data.tar.gz

2020-10-10 18:42:46 (8324): Guest Log: query.bed

2020-10-10 18:42:46 (8324): VM Completion File Detected.
2020-10-10 18:42:46 (8324): Powering off VM.
2020-10-10 18:42:48 (8324): Successfully stopped VM.
2020-10-10 18:42:48 (8324): Deregistering VM. (boinc_332c1116e18127d3, slot#11)
2020-10-10 18:42:48 (8324): Removing network bandwidth throttle group from VM.
2020-10-10 18:42:48 (8324): Removing VM from VirtualBox.
2020-10-10 18:42:48 (8324): Removing virtual ISO 9660 disk from VirtualBox.
18:42:54 (8324): called boinc_finish(0)

</stderr_txt>
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