Task 532520

Name boinc2docker_24825_1602237417.843322_2
Workunit 244270
Created 10 Oct 2020, 7:29:11 UTC
Sent 10 Oct 2020, 7:37:07 UTC
Report deadline 17 Oct 2020, 7:37:07 UTC
Received 10 Oct 2020, 8:48:09 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 673
Run time 3 min 24 sec
CPU time 2 min 10 sec
Validate state Valid
Credit 5.47
Device peak FLOPS 11.38 GFLOPS
Application version boinc2docker v1.07 (vbox64_mt)
windows_x86_64
Peak working set size 66.50 MB
Peak swap size 72.28 MB
Peak disk usage 449.79 MB

Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2020-10-10 18:47:50 (16128): vboxwrapper (7.9.26200): starting
2020-10-10 18:47:50 (16128): Feature: Checkpoint interval offset (365 seconds)
2020-10-10 18:47:50 (16128): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2020-10-10 18:47:50 (16128): Detected: Minimum checkpoint interval (600.000000 seconds)
2020-10-10 18:47:51 (16128): Create VM. (boinc_8d3cb3e0c7f3beae, slot#12)
2020-10-10 18:47:51 (16128): Updating drive controller type and model for desired configuration.
2020-10-10 18:47:52 (16128): Setting Memory Size for VM. (5268MB)
2020-10-10 18:47:52 (16128): Setting CPU Count for VM. (4)
2020-10-10 18:47:52 (16128): Setting Chipset Options for VM.
2020-10-10 18:47:53 (16128): Setting Boot Options for VM.
2020-10-10 18:47:53 (16128): Setting Network Configuration for NAT.
2020-10-10 18:47:53 (16128): Enabling VM Network Access.
2020-10-10 18:47:54 (16128): Disabling USB Support for VM.
2020-10-10 18:47:54 (16128): Disabling COM Port Support for VM.
2020-10-10 18:47:54 (16128): Disabling LPT Port Support for VM.
2020-10-10 18:47:55 (16128): Disabling Audio Support for VM.
2020-10-10 18:47:55 (16128): Disabling Clipboard Support for VM.
2020-10-10 18:47:56 (16128): Disabling Drag and Drop Support for VM.
2020-10-10 18:47:57 (16128): Adding storage controller(s) to VM.
2020-10-10 18:47:57 (16128): Adding virtual ISO 9660 disk drive to VM. (vm_isocontext.iso)
2020-10-10 18:47:57 (16128): Adding VirtualBox Guest Additions to VM.
2020-10-10 18:47:57 (16128): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2020-10-10 18:47:58 (16128): Enabling shared directory for VM.
2020-10-10 18:47:58 (16128): Starting VM using VboxManage interface. (boinc_8d3cb3e0c7f3beae, slot#12)
2020-10-10 18:48:04 (16128): Successfully started VM. (PID = '7440')
2020-10-10 18:48:04 (16128): Reporting VM Process ID to BOINC.
2020-10-10 18:48:11 (16128): Guest Log: BIOS: VirtualBox 6.1.12

2020-10-10 18:48:11 (16128): Guest Log: CPUID EDX: 0x178bfbff

2020-10-10 18:48:11 (16128): Guest Log: BIOS: No PCI IDE controller, not probing IDE

2020-10-10 18:48:11 (16128): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032

2020-10-10 18:48:11 (16128): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=80

2020-10-10 18:48:11 (16128): Guest Log: BIOS: Boot from Hard Disk 0 failed

2020-10-10 18:48:11 (16128): Guest Log: BIOS: Boot : bseqnr=2, bootseq=0003

2020-10-10 18:48:11 (16128): Guest Log: BIOS: Booting from CD-ROM...

2020-10-10 18:48:11 (16128): Guest Log: BIOS: KBD: unsupported int 16h function 03

2020-10-10 18:48:11 (16128): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 

2020-10-10 18:48:11 (16128): VM state change detected. (old = 'poweroff', new = 'running')
2020-10-10 18:48:22 (16128): Preference change detected
2020-10-10 18:48:22 (16128): Setting CPU throttle for VM. (100%)
2020-10-10 18:48:22 (16128): Setting checkpoint interval to 600 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 600 seconds))
2020-10-10 18:48:46 (16128): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds

2020-10-10 18:48:46 (16128): Guest Log: vboxguest: misc device minor 56, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)

2020-10-10 18:48:46 (16128): Guest Log: net.ipv4.ip_forward = 1

2020-10-10 18:48:46 (16128): Guest Log: sysctl: cannot stat /proc/sys/net/ipv6/conf/all/forwarding: No such file or directory

2020-10-10 18:48:46 (16128): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2020-10-10 18:48:46 (16128): Guest Log: sysctl: "cannot stat %s" is an unknown key

2020-10-10 18:48:46 (16128): Guest Log: sysctl: setting key "cannot stat %s": No such file or directory

2020-10-10 18:48:46 (16128): Guest Log: Segmentation fault

2020-10-10 18:48:46 (16128): Guest Log: automount ...

2020-10-10 18:48:46 (16128): Guest Log: Is the disk unpartitioned?, test for the 'boot2docker format-me' string

2020-10-10 18:48:46 (16128): Guest Log: automount over.

2020-10-10 18:48:46 (16128): Guest Log: Setting hostname to boot2docker Done.

2020-10-10 18:48:46 (16128): Guest Log: Sat Oct 10 18:48:43 UTC 2020 dhcp -------------------------------

2020-10-10 18:48:51 (16128): Guest Log: udevadm settle - timeout of 5 seconds reached, the event queue contains:

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1118)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00 (1360)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:00 (1361)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:01 (1362)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:02 (1363)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXCPU:03 (1364)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00 (1365)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0 (1366)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXPWRBN:00/input/input0/event0 (1367)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00 (1368)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1 (1369)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSLPBN:00/input/input1/event1 (1370)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00 (1371)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00 (1372)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00 (1373)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/ACPI0003:00/power_supply/AC (1374)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00 (1375)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/device:03 (1376)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6 (1377)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/LNXVIDEO:00/input/input6/event5 (1378)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:00 (1379)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0400:01 (1380)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:00 (1381)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:01 (1382)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:02 (1383)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0501:03 (1384)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C02:00 (1385)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP0C0A:00 (1386)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/PNP8390:00 (1387)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00 (1388)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/APP0001:00 (1389)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0000:00 (1390)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0100:00 (1391)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0103:00 (1392)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0200:00 (1393)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0303:00 (1394)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0700:00 (1395)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0B00:00 (1396)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:00/PNP0F03:00 (1397)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:01 (1398)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:01/device:02 (1399)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0A03:00/device:04 (1400)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:00 (1401)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:01 (1402)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:02 (1403)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:00/PNP0C0F:03 (1404)

2020-10-10 18:48:51 (16128): Guest Log:   /sys/devices/LNXSYSTM:00/LNXSYBUS:01 (1405)

2020-10-10 18:48:51 (16128): Guest Log: Sat Oct 10 18:48:49 UTC 2020 dhcp -------------------------------

2020-10-10 18:48:51 (16128): Guest Log: VBoxService 5.0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000158 main     Log opened 2020-10-10T18:48:49.401841000Z

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000342 main     OS Product: Linux

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000462 main     OS Release: 4.1.19-boot2docker

2020-10-10 18:48:51 (16128): Guest Log: VBoxSe00:00:00.000600 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2020-10-10 18:48:51 (16128): Guest Log: vic00:00:00.000680 main     Executable: /sbin/VBoxService

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000683 main     Process ID: 876

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000685 main     Package type: LINUX_64BITS_GENERIC

2020-10-10 18:48:51 (16128): Guest Log: .0.16 r105871 (verbosity: 0) linux.amd64 (Mar  4 2016 17:38:55) release log

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.002595 main     5.0.16 r105871 started. Verbose level = 0

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.014220 vminfo   rtldrNativeLoad: dlopen('libdbus-1.so.3', RTLD_NOW | RTLD_LOCAL) failed: libdbus-1.so.3: cannot open shared object file: No such file or directory

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.014357 vminfo   Error: Unable to connect to system D-Bus (1/3): D-Bus not installed

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000158 main     Log opened 2020-10-10T18:48:49.401841000Z

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000342 main     OS Product: Linux

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000462 main     OS Release: 4.1.19-boot2docker

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000600 main     OS Version: #1 SMP Sun Apr 17 19:40:54 UTC 2016

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000680 main     Executable: /sbin/VBoxService

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000683 main     Process ID: 876

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.000685 main     Package type: LINUX_64BITS_GENERIC

2020-10-10 18:48:51 (16128): Guest Log: 00:00:00.002595 main     5.0.16 r105871 started. Verbose level = 0

2020-10-10 18:48:51 (16128): Guest Log: Mounting BOINC shared/...

2020-10-10 18:48:51 (16128): Guest Log: -------------------

2020-10-10 18:48:51 (16128): Guest Log: Sat Oct 10 07:48:51 UTC 2020

2020-10-10 18:48:56 (16128): Guest Log: 00:00:05.019609 vminfo   Error: Unable to connect to system D-Bus (2/3): D-Bus not installed

2020-10-10 18:48:56 (16128): Guest Log: Sat Oct 10 07:48:54 UTC 2020

2020-10-10 18:48:56 (16128): Guest Log: 1: lo: <LOOPBACK,UP,LOWER_UP> mtu 65536 qdisc noqueue state UNKNOWN group default 

2020-10-10 18:48:56 (16128): Guest Log:     link/loopback 00:00:00:00:00:00 brd 00:00:00:00:00:00

2020-10-10 18:48:56 (16128): Guest Log:     inet 127.0.0.1/8 scope host lo

2020-10-10 18:48:56 (16128): Guest Log:        valid_lft forever preferred_lft forever

2020-10-10 18:48:56 (16128): Guest Log:     inet6 ::1/128 scope host 

2020-10-10 18:48:56 (16128): Guest Log:        valid_lft forever preferred_lft forever

2020-10-10 18:48:56 (16128): Guest Log: 2: dummy0: <BROADCAST,NOARP> mtu 1500 qdisc noop state DOWN group default 

2020-10-10 18:48:56 (16128): Guest Log:     link/ether d2:0d:f0:cc:4e:d4 brd ff:ff:ff:ff:ff:ff

2020-10-10 18:48:56 (16128): Guest Log: 3: eth0: <BROADCAST,MULTICAST,UP,LOWER_UP> mtu 1500 qdisc pfifo_fast state UP group default qlen 1000

2020-10-10 18:48:56 (16128): Guest Log:     link/ether 08:00:27:a6:bf:c0 brd ff:ff:ff:ff:ff:ff

2020-10-10 18:48:56 (16128): Guest Log:     inet 10.0.2.15/24 brd 10.0.2.255 scope global eth0

2020-10-10 18:48:56 (16128): Guest Log:        valid_lft forever preferred_lft forever

2020-10-10 18:48:56 (16128): Guest Log:     inet6 fe80::a00:27ff:fea6:bfc0/64 scope link 

2020-10-10 18:48:56 (16128): Guest Log:        valid_lft forever preferred_lft forever

2020-10-10 18:48:56 (16128): Guest Log: -------------------

2020-10-10 18:48:56 (16128): Guest Log: Linking /etc/docker to /var/lib/boot2docker for persistence

2020-10-10 18:48:56 (16128): Guest Log: Waiting for Docker daemon to start...

2020-10-10 18:49:03 (16128): Guest Log: REPOSITORY          TAG                 IMAGE ID            CREATED             SIZE

2020-10-10 18:49:03 (16128): Guest Log: Running boinc_app...

2020-10-10 18:49:03 (16128): Guest Log: Importing Docker image from BOINC...

2020-10-10 18:49:03 (16128): Guest Log: 00:00:10.021305 vminfo   Error: Unable to connect to system D-Bus (3/3): D-Bus not installed

2020-10-10 18:51:04 (16128): Guest Log: Prerun diagnostics...

2020-10-10 18:51:04 (16128): Guest Log: REPOSITORY           TAG                 IMAGE ID            CREATED             SIZE

2020-10-10 18:51:04 (16128): Guest Log: carlosred/bedtools   latest              4ddcf547f34b        2 years ago         1.192 GB

2020-10-10 18:51:04 (16128): Guest Log: CONTAINER ID        IMAGE               COMMAND             CREATED             STATUS              PORTS               NAMES

2020-10-10 18:51:04 (16128): Guest Log: 1.2G	/var/lib/docker

2020-10-10 18:51:04 (16128): Guest Log:               total        used        free      shared  buff/cache   available

2020-10-10 18:51:04 (16128): Guest Log: Mem:           5096          62        3590        1376        1443        3598

2020-10-10 18:51:04 (16128): Guest Log: Swap:          1222           0        1222

2020-10-10 18:51:04 (16128): Guest Log: Prerun commands...

2020-10-10 18:51:04 (16128): Guest Log: Running... 

2020-10-10 18:51:04 (16128): Guest Log: --2020-10-10 07:50:59--  http://boinc.tacc.utexas.edu:5060/boincserver/v2/reef/saumya.shah@utsa.edu/data.tar.gz

2020-10-10 18:51:04 (16128): Guest Log: Resolving boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)... 129.114.60.150

2020-10-10 18:51:04 (16128): Guest Log: Connecting to boinc.tacc.utexas.edu (boinc.tacc.utexas.edu)|129.114.60.150|:5060... connected.

2020-10-10 18:51:04 (16128): Guest Log: HTTP request sent, awaiting response... 200 OK

2020-10-10 18:51:04 (16128): Guest Log: Length: 257 [text/html]

2020-10-10 18:51:04 (16128): Guest Log: Saving to: 'data.tar.gz'

2020-10-10 18:51:04 (16128): Guest Log:      0K                                                       100% 25.8M=0s

2020-10-10 18:51:04 (16128): Guest Log: 2020-10-10 07:51:00 (25.8 MB/s) - 'data.tar.gz' saved [257/257]

2020-10-10 18:51:04 (16128): Guest Log: Error: unable to open file or unable to determine types for file query.bed

2020-10-10 18:51:04 (16128): Guest Log: Postrun commands...

2020-10-10 18:51:04 (16128): Guest Log: boinc_app exited (0)

2020-10-10 18:51:04 (16128): Guest Log: Saving results...

2020-10-10 18:51:04 (16128): Guest Log: bed_test.txt

2020-10-10 18:51:04 (16128): Guest Log: d1.bed

2020-10-10 18:51:04 (16128): Guest Log: data.tar.gz

2020-10-10 18:51:04 (16128): Guest Log: query.bed

2020-10-10 18:51:04 (16128): VM Completion File Detected.
2020-10-10 18:51:04 (16128): Powering off VM.
2020-10-10 18:51:06 (16128): Successfully stopped VM.
2020-10-10 18:51:06 (16128): Deregistering VM. (boinc_8d3cb3e0c7f3beae, slot#12)
2020-10-10 18:51:06 (16128): Removing network bandwidth throttle group from VM.
2020-10-10 18:51:06 (16128): Removing VM from VirtualBox.
2020-10-10 18:51:07 (16128): Removing virtual ISO 9660 disk from VirtualBox.
18:51:12 (16128): called boinc_finish(0)

</stderr_txt>
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